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Validation of Bhageerath

PDB ID 1B03
Protein Name Solution Structure of Antibody-Bound HIV1 IIIB V3 Peptide
Sequence (FASTA format) RKSIRIQRGPGRAFVTIG
Secondary Structure Information S 2-6, S 13-17
Native Structure 1b03
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB2) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
10.3
2
PDB2
4.4
3
PDB3
5.9
4
PDB4
5.5
5
PDB5
6.7
6
PDB6
5.4
7
PDB7
4.5
8
PDB8
6.1
9
PDB9
6.9
10
PDB10
7.5