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Validation of Bhageerath

PDB ID 1EDM
Protein Name Epidermal Growth Factor-like Domain from Human Factor IX
Sequence (FASTA format) VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCEL
Secondary Structure Information S 16-20, S 23-27
Native Structure 1edm
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB2) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
3.9
2
PDB2
3.5
3
PDB3
3.8
4
PDB4
4.0
5
PDB5
3.6
6
PDB6
5.2
7
PDB7
5.4
8
PDB8
4.1
9
PDB9
3.9
10
PDB10
4.7