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Validation of Bhageerath

PDB ID 1HDD
Protein Name Engrailed Homeodomain
Sequence (FASTA format) RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKKS
Secondary Structure Information H 8-20, H 26-36, H 40-56
Native Structure 1hdd
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB8) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
10.2
2
PDB2
6.3
3
PDB3
10.2
4
PDB4
5.5
5
PDB5
11.1
6
PDB6
6.2
7
PDB7
9.8
8
PDB8
4.8
9
PDB9
7.0
10
PDB10
6.7