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Validation of Bhageerath

PDB ID 1NKD
Protein Name Atomic Resolution Structure of the Rop Mutant
Sequence (FASTA format) MTKQEKTALNMARFIRSQTLTLLEKLNELADAADEQADICESLHDHADELYRSCLARFG
Secondary Structure Information H 2-29, H 34-58
Native Structure 1nkd
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB6) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
3.9
2
PDB2
16.2
3
PDB3
10.1
4
PDB4
7.0
5
PDB5
10.6
6
PDB6
3.8
7
PDB7
4.8
8
PDB8
4.9
9
PDB9
7.9
10
PDB10
14.7