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Validation of Bhageerath

PDB ID 1QR8
Protein Name Inhibition of HIV-1 Infectivity by Gp41 Core
Sequence (FASTA format) SGIVQQQNNLLRAIEAQQHLLQLTVRGIKQLQARSGGRGGWMEWDREINNYTSLIHSLIEESQNQQEK
Secondary Structure Information H 3-34, H 41-65
Native Structure 1qr8
H - Helix, B - Beta strand
The figure shows the Superimposition of the native structure with the lowest RMSD structure (PDB10) from the 10 lowest energy structures (Native is shown in Blue and lowest RMSD structure is in Red)
Predicted Structures
S.No Final 10 lowest energy structures RMSD(Å)
without end loops
1
PDB1
9.0
2
PDB2
11.1
3
PDB3
8.2
4
PDB4
7.1
5
PDB5
9.7
6
PDB6
14.0
7
PDB7
8.1
8
PDB8
10.9
9
PDB9
5.4
10
PDB10
4.4