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Latest Software


BHAGEERATH-H: A Homology ab-intio Hybrid Web
server for Protein Tertiary Structure Prediction

Sanjeevini: A Complete drug design tool.

Automated Version Of Active Site
Prediction (AADS):
Predicts 10 binding sites in a target and docks the
uploaded ligand molecule at all 10 sites predicted
in an automated mode.

Melting Temperature Predictor:
It predicts the melting temperature of DNA sequences.

pcSM Software:pcSM: Capturing Native
Protein Structures with a Physico-Chemical Metric.

ncRNA Gene DatabankncRNA Gene Databank
is a comprehensive database of
genes of non coding RNA
alongwith their product information.

Bioinformatics Software and Tools                       [Help Hotline]

1. Gene Predictor(ChemGenome 2.0)

Whole Genome Analysis

2. Bhageerath

 Predicts native-like structures for small globular proteins 

3. Sanjeevini

  A complete drug design software. 

4. Binding Affinity Prediction of Protein-Ligand Server(BAPPL)

 Computes the binding free energy of a protein-ligand complex.

5. Binding Affinity Prediction of Protein-Ligand complex containing Zinc Server (BAPPL-Z)

  Computes the binding free energy of a metalloprotein-ligand complex containing zinc.

6. Drug-DNA Interaction Energy (PreDDICTA)

 Calculates the Drug-DNA interaction energy.

7. ParDOCK - Automated Server for Rigid Docking

 Predicts the binding mode of the ligand in receptor target site.

8. Active Site Prediction

9. Automated Version Of Active Site Prediction (AADS)

 Predicts 10 binding sites in a protein target and docks the uploaded ligand molecule    at all 10 sites predicted in an automated mode.

10. DnaDOCK - Dna Ligand Docking

 All-atom energy based Monte Carlo DNA ligand docking

11. Non Redundant Database of Small Molecules

 Virtual high throughput screening of small molecules and their optimization into  lead like candidates.

12. Lipinski Filters

 Checks whether a drug satisfies the 5 Lipinski rules.

13. DNA Sequence to Structure

 Generates double helical secondary structure of DNA using conformational parameters taken from experimental fiber-diffraction studies.

14. Gene Evaluator(ChemGenome 1.1)

 Characterizes a DNA sequence as gene or nongene

15. Protein Structure Generation 

 Structure Generation from given dihedrals

16. Persistence Length

 Filters for Globular Protein Evaluation

17. Radius of Gyration

 Filters for Globular Protein Evaluation

18. Hydrophobicity

  Filters for Globular Protein Evaluation

19. Packing Fraction

 Filters for Globular Protein Evaluation

20. ProRegIn

 Protein Regularity Index

21. Protein structure optimizer

 Energy minimizer for proteins

22. ProSEE

 Scoring Function for Protein Structure Evaluation Calculates intramolecular energy of a protein in component-wise break up.

23. Superimpose

  Fits two molecules and calculates the RMSD between them.

24. Protein Angle Descriptor

 Calculates the angles & dihedral in the main chain of the protein

25. Wiener Index Calculator

 This tool is useful for calculating Wiener index.

26. RASPD for Preliminary Screening of Drugs

   This tool is useful for preliminary screening of drug molecules based on Wiener  index calculation. This will predict binding energy of drug/target at a preliminary stage.

27. BGPred(Beta Gamma Turn Predictor)

BG Pred web server predicts beta and gamma turns.

28. Volume Calculator

 Calculates the volume of a molecule

29. Melting Temperature Predictor (For oligonuclotide)

 It predicts the melting temperature of short DNA sequences (upto 70 base pairs) at a user defined salt within the specified range.

30. Genome analysis by melting

It predicts the melting temperature for longer(>70 bases) DNA sequences, and it also gives the melting profile for the sequence.

31. Transferrable Partial Atomic Charge Model - up to 4 bonds (TPACM4)

This tool is used for assignment of partial atomic charge of small molecules.

32. PROSECSC

PROTEIN SECONDARY STRUCTURE PREDICTION.

33. Gene Predictor(ChemGenome 3.0)

 ChemGenome 3.0 is a gene prediction tool that takes a whole genome sequence or a part of the genome of a prokaryote or virus as input and predicts genes along with their coressponding protein sequences in all the six reading frames.

34.Bhageerath-H

 A Homology ab-initio Hybrid Web server for Protein Tertiary Structure Prediction. Starting with sequence, the web server predicts 5 native-like candidate structures    for the protein. 

35. pcSM Software

pcSM: Capturing Native Protein Structures with a Physico-Chemical Metric.

36. MD Parameter based Tm Predictor
37. D2N:Distance to Native
38. SOM Prediction
39.  BAITOC: Bioactivity information to organic chemists
40. RM2TS

  From Ramchandran Maps to Tertiary Structures of Proteins.

41. ProtSAV

  A Protein Tertiary Structure Analysis and Validation Server

42. Intercalate



 


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