Unique Sequence Predictor

click here to see flow chart


     
Frequency Counter

Submit sequence of interest to find Chromosome-wise frequency.






Position Finder

Gives start position of the query sequence in the genome. This serves as input for Nucleotide Sequence Extender.








-:Positions:-

Nucleotide Sequence Extender

This predicts shortest unique sequences in all three possible directions.




     







To get unique sequence > 30 neucleotide

Select direction of your choice.


     



Closest Sequence Finder

This tool identifies the sequence next closest to the unique sequence predicted by nucleotide sequence extender. If nucleotide extender predicts a sequence which is 'n' nucleotide long then closest sequence finder locates the occurrence of 'n-1' and 'n-2' sequences in the whole genome. This will help the user to identify the sequence where the drug may bind non-specifically.





     




Additional Analysis