ParDOCK is an all-atom energy based Monte Carlo,rigid protein ligand docking, implemented in a fully automated, parallel processing mode which predicts the binding mode of the ligand in receptor target site
The structural input data for the ParDOCK are optimized reference complex i.e. protein bound with a ligand (Sample File) and a candidate ligand to be docked(Sample file).
ParDOCK has been tested on 226 protein-ligand complexes.
Click here to access the 226 protein ligand dataset.
 Gupta, A. Gandhimathi, A. Sharma, P. and Jayaram, B. (2007) ParDOCK: An All Atom Energy Based Monte Carlo Docking Protocol for Protein-Ligand Complexes. Protein and Peptide Letters, 2007, 14, 7, 632-646.