Cerius

Accelrys

Molecular modeling and de novo drug design
http://www.accelrys.com/products/insight/

Computational models for the prediction of ADME properties derived from chemicalstructures.
http://www.accelrys.com/products/cerius2/

Sybyl

Tripos

Computational informatics software for drug discovery
http://www.tripos.com/

Molecular Operating Environment (MOE)

Chemical Computing Group

Bioinformatics, cheminformatics, protein modeling, structure-based design, high throughput lead discovery and molecular modeling and simulations.
http://www.chemcomp.com/

Glide, Prime, Maestro

Schrödinger Inc.

Provides a complete suite of softwares that addresses the challenges in pharmaceutical research
http://www.schrodinger.com/

Bio-Suite

Tata Consultancy Services Ltd

Genomics, protein modeling and structural analysis, simulation and drug Design.
http://www.atc.tcs.co.in/biosuite/

Active site directed drug design
http://www.scfbio-itd.res.in/research/drugdesign.htm