#!/bin/bash
jobId=$1
cd /home/websuite/software/proteomics/$jobId;
#echo $email > emailAddress;
awk '{print $1}' Procheck > options.txt
awk '{print $1}' ProSA >> options.txt
awk '{print $1}' ERRAT >> options.txt
awk '{print $1}' Verify3D >> options.txt
awk '{print $1}' dDFire >> options.txt
awk '{print $1}' Naccess >> options.txt
awk '{print $1}' MolProbity >> options.txt
awk '{print $1}' D2N >> options.txt
awk '{print $1}' ProQ >> options.txt
awk '{print $1}' GraProStr >> options.txt
rm Procheck ProSA ERRAT Verify3D dDFire Naccess MolProbity D2N ProQ GraProStr
 #mkdir /home/websuite/software/proteomics/$jobId/test
`scp -r /home/websuite/software/proteomics/$jobId rahul2@10.209.96.204:"/home/rahul2/SAVPro/upload_PDB/$jobId"`;
 mkdir /home/websuite/software/proteomics/$jobId/Result
`ssh rahul2@10.209.96.204 "cd /home/rahul2/SAVPro/Shell_files; sh MAIN.sh $jobId"`;
#`scp -r rahul2@10.209.96.204:/home/rahul2/SAVPro/Module_Results/$jobId/* /home/websuite/software/proteomics/$jobId/Result`
#sleep 300
`scp -r rahul2@10.209.96.204:/home/rahul2/SAVPro/Module_Results/$jobId/*.zip  /home/websuite/software/proteomics/$jobId/Result`
`scp -r rahul2@10.209.96.204:/home/rahul2/SAVPro/Module_Results/$jobId/model.* /home/websuite/software/proteomics/$jobId/Result`