Help for Web enabled BG Pred
Step1: Input Protein Sequence (Single letter Code) not more then 100 amino acids
For eg: 'GELVEIETDKVVLEVPAEKELVEGLLPIHG '
Step 2: Input secondary Structure Information: Specify secondary structure information to give Helix or Sheet information(optional)
Step3: Click on Predict button to get the beta turns and gamma turns.
Beta turn Output:
BETATURN First best DKVV 9-12 VIII
BETATURN Second best DKVV 9-12 I
Structure 1 :
Structure 2 :
Gamma turn Output:
GAMMATURN VEG 22-24 CLASSIC
BETA TURN OUTPUT:
First best and second best represents the first and second most probable beta turn types.
For example: DKVV represents the predicted beta turn.
9-12 represents start and end position of beta turn in input protein sequence
VII represents the first best predicted beta turn type for DKVV; I represents the second best predicted beta turn type for DKVV.
Structure 1 and structure 2 are the respective structures for motifs comprising two secondary structural elements with the predicted first best and second best beta turn types for the loop in between.
GAMMA TURN OUTPUT:
For example: VEG represents predicted gamma turn.
22-24 represents the start and end position of gamma turn in input protein sequence.
CLASSIC represent predicted gamma turn type for VEG.
Structure 1 represents structure for motif comprising two secondary structural elements with predicted gamma turn type for the loop in between.