import java.io.*; class PrepareInputFile { public static void main(String args[]) { System.out.println("hello "+args[0]); try { /* BufferedReader in = new BufferedReader(new FileReader("sableseq")); String str="",str11=""; while((str = in.readLine())!=null) { str=str.trim(); str11=str11+str; } in.close(); */ // System.out.println(str11); BufferedReader in1 = new BufferedReader(new FileReader(args[0]+".in")); String str1; str1 = in1.readLine(); str1 = in1.readLine(); in1.close(); BufferedReader in2 = new BufferedReader(new FileReader(args[0]+".horiz")); String horizfile="",str2; while((str2 = in2.readLine())!=null) { String [] temp = null; str2=str2.trim(); //System.out.println(str2); //System.out.println(str2.length()); if(str2.length()!=0 && (str2.charAt(0)=='P'&& str2.charAt(1)=='r' && str2.charAt(2)=='e' && str2.charAt(3)=='d' && str2.length()>5)) { temp = str2.split(":"); //if(temp[0].equals("Pred")); temp[1]=temp[1].trim(); horizfile=horizfile+temp[1]; } } in2.close(); // System.out.println(str11+"\n"+str1+"\n"+horizfile); System.out.println(str1+"\n"+horizfile); BufferedWriter out = new BufferedWriter(new FileWriter("test1.dat")); // out.write(">inseq\n"+str1+"\n"+temp[1]+"\n"+str+"\n$"); //out.write(">inseq\n"+str1+"\n>\n"+horizfile+"\n>\n"+str11+"\n$"); out.write(">inseq\n"+str1+"\n>\n"+horizfile+"\n>\n"+"$"); out.close(); } catch (IOException e) { System.out.println("Except "+ e); } } }