Step1 : Input Protein Sequence (Single letter Code)
For eg: 'PAAAASWVKSNIQAYPKVSFRYVCVGN '
Step 2: Input secondary Structure Information: Specify secondary structure information to give Helix or Sheet information(optional)
For eg you want Helix region from 1- 12 amino acid and Sheet from 12 - 27
Helix : 1-12
Sheet : 21-27
Step3 :Click on Customize dihedrals to get Dihedral information. If you want to change the dihedral information for an amino acid, you can do it by editing the corresponding value.
| 1 |
NPRO |
-58.00 -36.40 |
H |
| 2 |
ALA |
-63.60 -39.30 |
H |
| 3 |
ALA |
-63.60 -39.30 |
H |
| 4 |
ALA |
-63.60 -39.30 |
H |
| 5 |
ALA |
-63.60 -39.30 |
H |
| 6 |
SER |
-65.80 -36.50 |
H |
| 7 |
TRP |
-64.70 -40.10 |
H |
| 8 |
VAL |
-65.50 -41.70 |
H |
| 9 |
LYS |
-64.70 -39.40 |
H |
| 10 |
SER |
-65.80 -36.50 |
H |
| 11 |
ASN |
-66.60 -36.00 |
H |
| 12 |
ILE |
-65.10 -42.10 |
H |
| 13 |
GLN |
-105.00 125.00 |
L |
| 14 |
ALA |
-125.00 135.00 |
L |
| 15 |
TYR |
-125.00 145.00 |
L |
| 16 |
PRO |
-65.00 145.00 |
L |
| 17 |
LYS |
-85.00 -25.00 |
L |
| 18 |
VAL |
-125.00 145.00 |
L |
| 19 |
SER |
-75.00 145.00 |
L |
| 20 |
PHE |
-125.00 155.00 |
L |
| 21 |
ARG |
-110.00 150.00 |
S |
| 22 |
TYR |
-110.00 160.00 |
S |
| 23 |
VAL |
-110.00 150.00 |
S |
| 24 |
CYS |
-110.00 150.00 |
S |
| 25 |
VAL |
-110.00 150.00 |
S |
| 26 |
GLY |
160.00 180.00 |
S |
| 27 |
CASN |
-110.00 150.00 |
S |
Step 4: Enter pdb name: xyz (This wll generate PDB file by the file name provided by you)
Click on ‘Generate structure’ ,it will generate 'xyz.pdb'
xyz.pdb (PDB Format)
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