BHAGEERATH : An Energy Based Protein Structure Prediction Server

The present version of"Bhageerath" accepts amino acid sequence and secondary structure information to predict 5 candidate structures for the native. It is anticipated that at least one native like structure (RMSD < 7Å without end loops) is present in the final structures. The server has been validated on 80 small globular proteins. Know about Protein Folding

Download BHAGEERATH 1.0 for Solaris 10.0 environment from here.

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Input Amino acid sequence    OR   Click on the Amino acid to add to the sequence

Secondary Structure Information

Select Option Auto Secondary Structure Prediction  Enter Secondary Structure Information 

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[1] S. R. Shenoy and B. Jayaram, "Proteins: sequence to structure and function- current Status", Current Protein and Peptide Science, 2010, 11(7), 498-514.
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[2] B. Jayaram, Kumkum Bhushan, et al., "Bhageerath : An Energy Based Web Enabled Computer Software Suite for Limiting the Search Space of Tertiary Structures of Small Globular Proteins". Nucl. Acids Res., 2006, 34, 6195-6204.
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[3] Pooja Narang, Kumkum Bhushan, Surojit Bose, B. Jayaram, "Protein structure evaluation using an all-atom energy based empirical scoring function", J. Biomol. Str. Dyn., 2006, 23, 385-406.
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[4] P. Narang, K. Bhushan, S. Bose and B. Jayaram, "A computational pathway for bracketing native-like structures for small alpha helical globular proteins", Phys. Chem. Chem. Phys., 2005, 7, 2364-2375.
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