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DNA Sequence to Structure


This tool generates double helical secondary structure of DNA using conformational parameters taken from experimental fiber-diffraction studies1.

DNA Sequence To Structure
Input
Paste the Sequence or make the sequence by Clicking buttons

       

A-DNA    B-DNA MD DNA

Output
   Link to Output file :  

How to Use the Tool
  1. Enter the sequence in 5' to 3' order (only A, G, C, and T).
  2. Specify your choice of secondary structure either A DNA or B DNA or Molecular Dynamics Averaged Strcuture.
  3. Output is the DNA structure in Cartesian coordinates(PDB format).

Reference

1. S. Arnott, P.J. Campbell-Smith & R. Chandrasekaran. In Handbook of Biochemistry and Molecular Biology, 3rd ed. Nucleic Acids--Volume II, G.P. Fasman, Ed. Cleveland: CRC Press, (1976). pp. 411-422.
 

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