Submit sequence of interest to find Chromosome-wise frequency.
Gives start position of the query sequence in the genome. This serves as input for Nucleotide Sequence Extender.
Nucleotide Sequence Extender
This predicts shortest unique sequences in all three possible directions.
To get unique sequence > 30 neucleotide
Select direction of your choice.
Closest Sequence Finder
This tool identifies the sequence next closest to the unique sequence predicted by nucleotide sequence extender. If nucleotide extender predicts a sequence which is 'n' nucleotide long then closest sequence finder locates the occurrence of 'n-1' and 'n-2' sequences in the whole genome. This will help the user to identify the sequence where the drug may bind non-specifically.
Please cite Onco-Rrgulon article (provided below), if you use this tool for publication/research purpose:
Navneet Tomar, Akhilesh Mishra, Nirotpal Mrinal and B. Jayaram, "Onco-Regulon: An Integrated database and software suite for site specific targeting of transcription factors of cancer genes", Database, 2016.
Copyright 2004-2015, Prof B. Jayaram & Co-workers.